YES

We show the termination of the TRS R:

  f(g(X)) -> g(f(f(X)))
  f(h(X)) -> h(g(X))

-- SCC decomposition.

Consider the dependency pair problem (P, R), where P consists of

p1: f#(g(X)) -> f#(f(X))
p2: f#(g(X)) -> f#(X)

and R consists of:

r1: f(g(X)) -> g(f(f(X)))
r2: f(h(X)) -> h(g(X))

The estimated dependency graph contains the following SCCs:

  {p1, p2}


-- Reduction pair.

Consider the dependency pair problem (P, R), where P consists of

p1: f#(g(X)) -> f#(f(X))
p2: f#(g(X)) -> f#(X)

and R consists of:

r1: f(g(X)) -> g(f(f(X)))
r2: f(h(X)) -> h(g(X))

The set of usable rules consists of

  r1, r2

Take the reduction pair:

  lexicographic path order with precedence:
  
    precedence:
    
      f > g > h > f#
    
    argument filter:
  
      pi(f#) = 1
      pi(g) = [1]
      pi(f) = 1
      pi(h) = []

The next rules are strictly ordered:

  p1, p2

We remove them from the problem.  Then no dependency pair remains.